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AB1700Guide
AB1700Guide: Complete gene expression Software solution for Applied Biosystems Microarray Platform. Register for a 15 days free trial (Click Here)
OVERVIEW AB1700Guide is a Spotfire integrated directed workflow applying a wide range of statistical libraries of Bioconductor and outstanding graphical capabilities of Spotfire DecisionSite©. Therefore, the AB1700Guide combines the powerful R calculation engine with the great visual data mining of Spotfire for its guided analytics. This perfect synergy of two very strong applications is providing researchers a complete software suite for analyzing, displaying and interacting with Applied Biosystems microarray data. Within minutes, the user is obtaining a reliable list of annotated differentially expressed genes. In addition, the software is totally customizable to specific researcher needs. BENEFITS - Enables non-expert users to run analysis within a few minutes - Powerful Statistics: 100% Bioconductor - Powerful Visualization: Uses Spotfire DecisionSite©, known as one of the best visualization tools in the microarray market - Integrated Functional Analysis with Panther - Customizable and constantly evolving - Technical support and initial training provided - Output files ready for functional analysis with ArrayUnlock® KEY FEATURES - Direct import of raw AB1700 data - Interactive Experiment Design and Visualization - Quality Control of Replicated Arrays - Analysis of Internal Control Probes - Probe filtering by S/N and Flags - Several array normalization procedures (Quantile, Scale and VSN) - Differential Expression Analysis with P-values, FDR (supported by Bioconductor's LIMMA and SAM packages) - Clustering methods, Gene Ontology(GO) annotation , Profile Search and Venn logic capabilities - Automatic Import of Annotation from Panther Database REQUIREMENTS - Spotfire DecisionSite© and Functional Genomics package - R environment - Bioconductor libraries LIMMA, Biobase and SAM For further functional analysis of large amounts of differentially expressed genes the output from AB1700Guide can be directly integrated into the new analysis tool ArrayUnlock®. For more information on ArrayUnlock®, please check here!
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